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#
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#               National Center for Biotechnology Information
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add_compile_definitions( __mod__="tools/sra-sort" )

# Internal
if( NOT WIN32 )
	GenerateExecutableWithDefs( dump-blob-boundaries "dump-blob-boundaries" "" "" "${COMMON_LINK_LIBRARIES};${COMMON_LIBS_READ}" )
	MakeLinksExe( dump-blob-boundaries false )
endif()

# External

set( SRA_SORT_SRC
	caps
	mem
	membank
	paged-membank
	paged-mmapbank
	except
	idx-mapping
	map-file
	col-pair
	row-set
	simple-row-set
	mapping-row-set
	sorting-row-set
	meta-pair
	dir-pair
	tbl-pair
	db-pair
	glob-poslen
	poslen-col-pair
	ref-alignid-col
	buff-writer
	id-mapper-col
	capture-first-half-aligned
	run
	sra-sort
	xcheck-ref-align

	csra-tbl
	csra-pair
)

GenerateExecutableWithDefs( sra-sort "${SRA_SORT_SRC}" "" "" "${COMMON_LINK_LIBRARIES};${COMMON_LIBS_WRITE}" )
MakeLinksExe( sra-sort false )

GenerateExecutableWithDefs( sra-sort-cg "${SRA_SORT_SRC}" "SEQUENCE_BEFORE_SECONDARY=0" "" "${COMMON_LINK_LIBRARIES};${COMMON_LIBS_WRITE}" )
MakeLinksExe( sra-sort-cg false )
